Kevin G. McCracken

Institute of Arctic Biology, Department of Biology and Wildlife, and University of Alaska Museum of the North

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Research Interests:

My research interests are in evolutionary biology and the genetics of adaptation. Field studies and analytical methods from a variety of different disciplines including genetics, physiology, protein chemistry, and wildlife population biology are being used to address questions about the process of adaptation and natural selection, at both the molecular level and in whole organisms. Waterfowl and other species inhabiting high-altitude regions such as the Andes are of particular interest.

High-altitude regions are characterized by simple physiographic differences in environmental variables such as ambient pressure and temperature that vary across elevational gradients in well-defined ways. This makes the study of natural selection and its effects on genetic polymorphism simpler and less complicated than it might be for complex traits that have many environmental correlates. Hypoxia in particular is one of the most important factors influencing survival at high elevations, and biochemical changes in the blood protein hemoglobin (Hb) have been shown to mitigate the effects of chronic hypoxia in high-altitude adapted populations. Surveys of hemoglobin amino acid polymorphism in Andean waterfowl suggest that genotypic variants that are over-represented in high-altitude populations have different fitness rankings in different elevational zones and influence Hb-O2 affinity. Our studies have further revealed that parallel substitutions evolved in distantly related lineages and are concentrated in the same few regions of the protein. Experimental studies of Hb function and blood properties are being combined with mutli-locus population genetic analyses to study the mechanistic basis of these apparent adaptations. One question we aim to answer is whether the same or different mechanisms underlie parallel changes in replicate lineages that independently colonized the Andes and other high-altitude regions. Other questions focus on the role of phenotypic plasticity, and specifically how individuals modulate their Hb-O2 carrying capacity when they disperse across elevational gradients. Additional projects in our lab are examining the influence of selection on non-coding DNA sequences, as well as a variety of population-level studies of waterfowl species, including their role as intercontinental vectors of avian influenza and paramyxoviruses.

Collaborators include Jay Storz at the University of Nebraska, Roy Weber at the University of Aarhus, Jeff Peters at Wright State University, Mary Kuhner at the University of Washington, and Daniel Cadena and his students at Universidad de los Andes in Colombia. We also maintain close working ties with investigators at the Alaska Science Center and several South American museums including the Centro de Ornitologia y Biodiversidad (CORBIDI) and the Museo Argentino de Ciencias Naturales (MACN).

Students with strong interests in population genetics, high-altitude physiology, Andean biogeography, or any aspect of waterfowl ecology and management are encouraged to contact us.

If you are interested in conducting research in my lab, click here for my suggestions for prospective graduate students. The Department of Biology and Wildlife at the University of Alaska Fairbanks offers competitive teaching and research assistantships. Applications are reviewed twice annually with deadlines on 15 September and 15 January. You can follow recent activitites in my lab on our Google+ website.

Grant support: NSF 0444748, 0746365, 0814322, 0949439/0949931

People in the Lab:    
Andrea Price M.S. Student  
Natalia Gutiérrez M.S. Student Universidad de los Andes, Bogota, Colombia -coadvised with Daniel Cadena
María Lozano M.S. Student Universidad de los Andes, Bogota, Colombia - coadvised with Daniel Cadena
Luis Alza Centro de Ornitología y Biodiversidad, Lima, Peru  
Daniela Wilner REU student  
Matthew Smith REU student  
     
Former Ph.D. Students: When they graduated and where they are now:
Lecture Courses:
Robert Wilson 2011 - USGS, Alaska Science Center Principles of Genetics
Mariana Bulgarella 2010 - Massey University, New Zealand Systematic & Comparative Biology
Travis Booms 2010 - Alaska Department of Fish and Game Modern Synthesis of Evolution
John Pearce 2008 - USGS, Alaska Science Center High-altitude Adaptation
Jen Schmidt 2007 - UAF
Sarah Sonsthagen 2006 - USGS, Alaska Science Center
   
Coadvised Ph.D. Students:  
Patrick-Jean Guay 2008 - Victoria University, Melbourne, Australia
Irina Kulikova 2005 - Institute of Biology & Soil Science, Vladivostok, Russia
   
Former Postdocs:  
Jeff Peters Wright State University
   
Highlighted Research Articles:
         
Publications: (bold text indicates lab member)
2012   Wilson, R. E., M. D. Eaton, and K. G. McCracken. Plumage and body size differences in Blue-winged Teal and Cinnamon Teal. Avian Biology Research (in press).
     
2012   Peters, J. L., T. E. Roberts, K. Winker, and K. G. McCracken. Heterogeneity in genetic diversity among non-coding loci fails to fit neutral coalescent models of population history. PLoS ONE (in press).
     
2012
Bulgarella, M., J. L. Peters, C. Kopuchian, T. Valqui, R. E. Wilson, and K. G. McCracken. Multilocus coalescent analysis of haemoglobin differentiation between low- and high-altitude populations of crested ducks (Lophonetta specularioides). Molecular Ecology 21:350-368.
     
2011
Booms, T. L., S. L. Talbot, G. K. Sage, B. J. McCaffery, K. G. McCracken, and P. F. Schempf. Nest-site fidelity and dispersal of Gyrfalcons estimated by noninvasive genetic sampling. Condor 113:768-778.
     
2011
Wilson, R. E., M. D. Eaton, S. A. Sonsthagen, J. L. Peters, K. P. Johnson, B. Simarra, and K. G. McCracken. Speciation, subspecies divergence, and paraphyly in Cinnamon Teal and Blue-winged Teal. Condor 113:747-761.
     
2011
McCracken, K. G., and R. E. Wilson. Gene flow and hybridization between numerically imbalanced populations of two duck species in the Falkland Islands. PLoS ONE 6:e23173
     
2011
Sonsthagen, S. A., S. L. Talbot, K. T. Scribner, and K. G. McCracken. Multilocus phylogeography and population structure of common eiders breeding in North America and Scandinavia. Journal of Biogeography 38:1368-1380
     
2010
Guay, P.-J., R. T. Chesser, R. A. Mulder, A. D. Afton, D. C. Paton, and K. G. McCracken. East-west genetic differentiation in Musk Ducks (Biziura lobata) of Australia suggests late Pleistocene divergence at the Nullarbor Plain. Conservation Genetics 11:2105-2120
 
 
2010
McCracken, K. G., C. P. Barger, and M. D. Sorenson. Phylogenetic and structural analysis of the HbA (alpha-A/beta-A) and HbD (alpha-D/beta-A) hemoglobin genes in two high-altitude waterfowl from the Himalayas and the Andes: Bar-headed Goose (Anser indicus) and Andean Goose (Chloephaga melanoptera). Molecular Phylogenetics and Evolution 56:649-658
 
 
2010
Bulgarella, M., M. D. Sorenson, J. L. Peters, R. E. Wilson, and K. G. McCracken. Phylogenetic relationships of Amazonetta, Speculanas, Lophonetta, and Tachyeres: Four morphologicall divergent duck genera endemic to South America. Journal of Avian Biology 41:186-199
 
 
2010
Wilson, R. E., M. Eaton, T. H. Valqui, and K. G. McCracken.  Ecogeographic variation in Cinnamon Teal (Anas cyanoptera) along elevational and latitudinal gradients.  Ornithological Monographs 67:141-161
 
 
2010
Sonsthagen, S. A., S. L. Talbot, R. B. Lanctot, and K. G. McCracken. Do waterfowl nest in kin groups? Microgeographic genetic structure in a philopatric sea duck. Molecular Ecology 19:647-657
 
 
2009
McCracken, K. G., C. P. Barger, M. Bulgarella, K. P. Johnson, M. K. Kuhner, A. V. Moore, J. L. Peters., J. Trucco, T. H. Valqui, K. Winker, and R. E. Wilson. Signatures of high-altitude adaptation in the major hemoglobin of five species of Andean dabbling ducks. American Naturalist 174:631-650
 
 
2009
Pearce, J. M., K. G. McCracken, T. K. Christensen, and Y. N. Zhuravlev. Migratory patterns and population structure among breeding and wintering Red-breated (Mergus serrator) and Common Mergansers (M. merganser). The Auk 126:784-798
 
 
2009
Sonsthagen, S. A., S. L. Talbot, R. B. Lanctot, K. Scribner, and K. G. McCracken.  Hierarchical spatial genetic structure of Common Eiders (Somateria mollissima) breeding along a migratory corridor.  The Auk 126:744-754
 
 
2009
McCracken, K. G., C. P. Barger, M. Bulgarella, K. P. Johnson, S. A. Sonsthagen, J. Trucco, T. H. Valqui, R. E. Wilson, K. Winker, and M. D. Sorenson. Parellel evolution in the major hemoglobin genes of eight species of Andean waterfowl. Molecular Ecology 18:3992-4005
 
 
2009
Bulgarella, M., N. C. Stewart, V. B. Fedorov, A. V. Moore, and K. G. McCracken. Hemoglobin transcript abundance in a bone marrow cDNA library of Crested Ducks (Lophonetta specularioides) in the Peruvian high Andes. The Auk 126:666-672 [Summary of dbEST accessions]
 
 
2009
McCracken, K. G., M. Bulgarella, K. P. Johnson, M. K. Kuhner, J. Trucco, T. H. Valqui, R. E. Wilson, and J. L. Peters.  Gene flow in the face of countervailing selection: Adaptation to high-altitude hypoxia in the beta A hemoglobin subunit of Yellow-billed Pintails.  Molecular Biology and Evolution 26:815-827 [Cited by Faculty of 1000]
 
 
2009
Schmidt, J. I., K. J. Hundertmark, R. T. Bowyer, and K. G. McCracken.  Population structure and genetic diversity of moose in Alaska.  Journal of Heredity 100:170-180
 
 
2008
Wilson, R. E., and K. G. McCracken. Specimen shrinkage in Cinnamon Teal. Wilson Journal of Ornithology 120:390-392
 
 
2008
Wilson, R. E., M. Eaton, and K. G. McCracken. Color divergence among Cinnamon Teal (Anas cyanoptera) subspecies from North America and South America. Ornitologia Neotropical 19:307-314
 
 
2007
Bulgarella, M., R. E. Wilson, C. Kopuchian, T. H. Valqui, and K. G. McCracken. Elevational variation in body size of Crested Ducks (Lophonetta specularioides) from the Central High Andes, Mendoza, and Patagonia. Ornitologia Neotropical 18:587-602
 
 
2007
Sonsthagen, S. A., S. L. Talbot, and K. G. McCracken. Genetic characterization of Common Eiders breeding in the Yukon-Kuskokwin Delta, Alaska. Condor 109:878-893
 
 
2007
Wilson, R. E., S. A. Sonsthagen, C. P. Barger, and K. G. McCracken. Asymmetric molt or feather wear in Flying Steamer Ducks (Tachyeres patachonicus) from coastal habitats in Argentina. Ornitologia Neotropical 18:293-300
 
 
2007
McCracken, K. G. [Review of] Ducks, Geese, and Swans, Vol. 1 & 2.  Quarterly Review of Biology 82:157
 
 
2007
Brennan, P. L. R., R. O. Prum, K. G. McCracken, M. D. Sorenson, R. E. Wilson, and T. R. Birkhead. Coevolution of male and female genital morphology in waterfowl. PLoS ONE 2:e419
 
 
2007
Winker, K. , K. G. McCracken, D. D. Gibson, C. L. Pruett, R. Meier, F. Huettmann, M. Wege, I. V. Kulikova, Y. N. Zhuravlev, M. L. Perdue, E. Spackman, D. L. Suarez , and D. E. Swayne. Movement of birds and avian influenza from Asia to Alaska. Emerging Infectious Diseseases 13:547-552
 
 
2007
Spackman, E., K. G. McCracken, K. Winker, and D. E. Swayne. An avian influenza virus from waterfowl in South America contains genes from North American avian and equine lineages. Avian Diseases 51:273-274
 
 
2006
Wilson, R. E., T. H. Valqui, and K. G. McCracken. Aberrant plumage in the Yellow-billed Pintail Anas georgica. Wildfowl 56:192-196
 
 
2006
Sonsthagen, S. A., S. L. Talbot, R. B. Lanctot, K. T. Scribner, and K. G. McCracken. Population genetic structure of Common Eiders (Somateria mollissima) nesting on coastal barrier islands adjacent to oil facilities in the Beaufort Sea, Alaska. U.S. Department of Interior, Minerals Management Service, Final Report OCS Study MMS 2006-40:1-94.
 
 
2006
Spackman, E., K. G. McCracken, K. Winker, and D. E Swayne.  H7N3 avian influenza virus found in a South American wild duck is related to the Chilean 2002 poultry outbreak, contains genes from equine and North American wild bird lineages, and is adapted to domestic turkeys.  Journal of Virology 80:7760–7764
 
 
2006
Johnson, K. P., M. Kennedy, and K. G. McCracken. Reinterpreting the origins of flamingo lice: Cospeciation or host-switching. Biology Letters 2:275-278
 
 
2005
Kulikova, I. V., S. V. Drovetski, D. D. Gibson, R. J. Harrigan, S. Rohwer, M. D. Sorenson, K. Winker, Y. N. Zhuravlev, and K. G. McCracken. Phylogeography of the Mallard (Anas platyrhynchos): Hybridization, dispersal, and lineage sorting contribute to complex geographic structure. The Auk 122:949-965
 
 
2005
Peters, J. L., K. G. McCracken, R. E. Wilson, Y. N. Zhuravlev, Y. Lu, K. P. Johnson, and K. E. Omland. Phylogenetics of wigeons and allies (Anatidae: Anas spp.): The importance of sampling multiple loci and multiple individuals. Molecular Phylogenetics and Evolution 35:209-224
 
 
2005
McCracken, K. G., and M. D. Sorenson. Is homoplasy or lineage sorting the source of incongruent mtDNA and nuclear gene trees in the stiff-tailed ducks (Nomonyx-Oxyura)? Systematic Biology 54:35-55
 
 
2005
Callaghan, D., and K. G. McCracken. Musk Duck: Taxonomy pp. 213 in J. Kear (ed.) Bird Families of the World: Ducks, Geese, and Swans. Oxford University Press, Oxford.
 
 
2005
McCracken, K. G. Musk Duck Biziura lobata pp. 213-217 in J. Kear (ed.) Bird Families of the World: Ducks, Geese, and Swans. Oxford University Press, Oxford.
 
 
2005
Callaghan, D., and K. G. McCracken. The stiff-tailed ducks and their allies: Taxonomy in J. Kear (ed.) pp. 343-346 in Bird Families of the World: Ducks, Geese, and Swans. Oxford University Press, Oxford.
 
 
2004
Wilson, R. E., S. D. Goldfeder, and K. G. McCracken. Bill sexual dichromatism of Yellow-billed Pintail (Anas georgica) and Speckled Teal (A. flavirostris). Ornitologia Neotropical 15:543-545
 
 
2004
Kulikova, I. V., Y. N. Zhuravlev, and K. G. McCracken. Asymmetric hybridization and sex-biased gene flow between Eastern Spot-billed Ducks and Mallards in the Russian Far East. The Auk 121:930-949
 
 
2003
McCracken, K. G., J. Hemmings, D. C. Paton, and A. D. Afton. Capture methods for Musk Ducks. Wildfowl 54:211-214
 
 
2002
McCracken, K. G., P. J. Fullagar, E. C. Slater, D. C. Paton, and A. D. Afton. Advertising displays of male Musk Ducks indicate population subdivision across the Nullarbor Plain of Australia. Wildfowl 53:137-154
 
 
2001
McCracken, K. G., R. E. Wilson, P. J. McCracken, and K. P. Johnson.  Are ducks impressed by drakes' display.  Nature 413:128
 
 
2001
McCracken, K. G., W. P. Johnson, and F. H. Sheldon.  Molecular population genetics, phylogeography, and conservation biology of the Mottled Duck (Anas fulvigula ).  Conservation Genetics 2:87-102
 
 
2001
McClellan, D. A., and K. G. McCracken.  Estimating the influence of selection on the variable amino acid sites of the cytochrome b protein functional domains.  Molecular Biology and Evolution 18:917-925
 
 
2000
McCracken, K. G., D. C. Paton, and A. D. Afton.  Sexual size dimorphism of the Musk Duck.  Wilson Bulletin 112:457-466
 
 
2000
McCracken, K. G., J. Harshman, M. D. Sorenson, and K. P. Johnson.  Are Ruddy Ducks and White-headed Ducks the same species?  British Birds 93:396-398
 
 
2000
McCracken, K. G., A. D. Afton, and D. C. Paton.  Nest and eggs of Musk Ducks (Biziura lobata) at Murray Lagoon, Cape Gantheaume Conservation Park, Kangaroo Island, South Australia.  South Australian Ornithologist 33:65-70
 
 
2000
McCracken, K. G.  The 20-cm spiny penis of the Argentine Lake Duck (Oxyura vittata).  The Auk 117:820-825 
 
 
2000
McCracken, K. G., A. D. Afton, and M. S. Peters.  Condition bias of hunter-shot Ring-necked Ducks exposed to lead.  Journal of Wildlife Management 64:584-590
 
 
2000
Sheldon, F. H., C. E. Jones, and K. G. McCracken.  Relative patterns and rates of evolution in heron nuclear and mitochondrial DNA.  Molecular Biology and Evolution 17:437-450
 
 
1999
McCracken, K. G., J. Harshman, D. A. McClellan, and A. D. Afton.  Data set incongruence and correlated character evolution: An example of functional convergence in the hind-limbs of stifftail diving ducks.  Systematic Biology 48:683-714
 
 
1999
McCracken, K. G. Systematics, ecology, and social biology of the Musk Duck (Biziura lobata) of Australia.  Ph.D. Dissertation, Louisiana State University, Baton Rouge, Louisiana.
 
 
1998
McCracken, K. G. [Review of] Ruddy ducks and other stifftails: Their behavior and biology.  Quarterly Review of Biology 73:362-363
 
 
1998
McCracken, K. G., and F. H. Sheldon.  Molecular and osteological heron phylogenies: Sources of incongruence.  The Auk 115:127-141
 
 
1997
McCracken, K. G., A. D. Afton, and R. T. Alisauskas.  Nest morphology and body size of Ross's Geese and Lesser Snow Geese.  The Auk 114:610-618
 
 
1997
McCracken, K. G., and F. H. Sheldon.  Avian vocalizations and phylogenetic signal.  Proceedings of the National Academy of Science USA. 94:3833-3836
 
 
1995
Sheldon, F. H., K. G. McCracken, and K. D. Stuebing.  Phylogenetic relationships of the Zigzag Heron (Zebrilus undulatus) and White-crested Bittern (Tigriornis leucolophus) estimated by DNA-DNA hybridization.  The Auk 112: 672-679
 
 
1995
McCracken, K. G., D. Amrol, N. Walker, and G. B. Craig, Jr.  Ectoparasites from mammals of Michigan's Upper Peninsula.  Vector Control Bulletin of the North Central States 4:42-53.
       
 
If you would like to find out more information about the McCracken Lab you can write to: Institute of Arctic Biology, 902 N. Koyukuk Dr.,
University of Alaska Fairbanks, Fairbanks, Alaska 99775; call 1 (907) 474-7640; or e-mail kmccrack at iab.alaska.edu
 
Last Updated: 14 January 2012